Index

Symbols

--config segmentation command line option --dcm nifti_to_series command line option --dcm_file nifti_to_rtstruct command line option --dcm_img rtstruct_to_nifti command line option --dcm_rt_file rtstruct_to_nifti command line option --default segmentation command line option --dose_format dicom_crawler command line option --file_suffix dicom_crawler command line option --image nifti_to_series command line option --image_format dicom_crawler command line option --input_dir dicom_crawler command line option --mask nifti_to_rtstruct command line option --out_rt_filename nifti_to_rtstruct command line option --output segmentation command line option --output_dir dicom_crawler command line option rtstruct_to_nifti command line option --output_directory nifti_to_series command line option --output_img rtstruct_to_nifti command line option --overwrite dicom_crawler command line option --prefix rtstruct_to_nifti command line option --short_description dicom_crawler command line option --sort_by dicom_crawler command line option

--spacing rtstruct_to_nifti command line option --structure_format dicom_crawler command line option --tag nifti_to_series command line option --verbose dicom_crawler command line option -b dicom_crawler command line option -c segmentation command line option -d nifti_to_rtstruct command line option nifti_to_series command line option segmentation command line option -i dicom_crawler command line option nifti_to_series command line option rtstruct_to_nifti command line option -m nifti_to_rtstruct command line option -o dicom_crawler command line option nifti_to_rtstruct command line option nifti_to_series command line option segmentation command line option -od rtstruct_to_nifti command line option -oi rtstruct_to_nifti command line option -p rtstruct_to_nifti command line option -r rtstruct_to_nifti command line option -s dicom_crawler command line option -t nifti_to_series command line option -v dicom_crawler command line option

A

add_api_key() (in module platipy.backend.manage) add_bounding_box() (platipy.imaging.visualisation.visualiser.ImageVisualiser method), [1] add_comparison_overlay() (platipy.imaging.visualisation.visualiser.ImageVisualiser method), [1] add_contour() (platipy.imaging.visualisation.visualiser.ImageVisualiser method), [1] add_endpoint() (in module platipy.backend.views) add_scalar_overlay() (platipy.imaging.visualisation.visualiser.ImageVisualiser method), [1] add_vector_overlay() (platipy.imaging.visualisation.visualiser.ImageVisualiser method), [1] ae_title (platipy.backend.models.DicomLocation attribute) AlchemyEncoder (class in platipy.backend.models) ALGORITHM segmentation command line option Algorithm (class in platipy.backend.application) AlgorithmEndpoint (class in platipy.backend.api) algorithms (platipy.backend.application.FlaskApp attribute)

alignment_registration() (in module platipy.imaging.registration.linear), [1] api (platipy.backend.application.FlaskApp attribute) APIKey (class in platipy.backend.models) apply_augmentation() (in module platipy.imaging.generation.augment) apply_deformable_transform() (in module platipy.imaging.registration.utils), [1] apply_linear_transform() (in module platipy.imaging.registration.utils), [1] apply_transform() (in module platipy.imaging.registration.utils), [1] assert_bronchus_mask() (in module platipy.imaging.tests.test_bronchus) assert_lung_mask() (in module platipy.imaging.tests.test_bronchus) augment() (platipy.imaging.generation.augment.ContractAugment method) (platipy.imaging.generation.augment.DeformableAugment method) (platipy.imaging.generation.augment.ExpandAugment method) (platipy.imaging.generation.augment.ShiftAugment method) authenticate() (in module platipy.backend.api)

B

beat_started (platipy.backend.application.FlaskApp attribute) binary_decode_image() (in module platipy.imaging.label.utils), [1]

binary_encode_structure_list() (in module platipy.imaging.label.utils), [1] bronchus_data() (in module platipy.imaging.tests.test_bronchus) bspline_registration() (in module platipy.imaging.registration.deformable), [1]

C

calculate_d_cc_x() (in module platipy.imaging.dose.dvh) calculate_d_x() (in module platipy.imaging.dose.dvh) calculate_dvh() (in module platipy.imaging.dose.dvh) calculate_dvh_for_labels() (in module platipy.imaging.dose.dvh) calculate_v_x() (in module platipy.imaging.dose.dvh) cardiac_data() (in module platipy.imaging.tests.test_cardiac) cardiac_service() (in module platipy.imaging.projects.cardiac.service) cardiac_structure_guided_service() (in module platipy.imaging.projects.cardiac.service) celery_started (platipy.backend.application.FlaskApp attribute) children (platipy.backend.models.DataObject attribute) clear() (platipy.imaging.visualisation.visualiser.ImageVisualiser method), [1] com_from_image_list() (in module platipy.imaging.utils.vessel) combine_labels() (in module platipy.imaging.label.fusion) combine_labels_staple() (in module platipy.imaging.label.fusion) compute_apl() (in module platipy.imaging.label.comparison), [1] compute_metric_dsc() (in module platipy.imaging.label.comparison), [1] compute_metric_hd() (in module platipy.imaging.label.comparison), [1] compute_metric_masd() (in module platipy.imaging.label.comparison), [1] compute_metric_mean_apl() (in module platipy.imaging.label.comparison), [1] compute_metric_sensitivity() (in module platipy.imaging.label.comparison), [1] compute_metric_specificity() (in module platipy.imaging.label.comparison), [1]

compute_metric_total_apl() (in module platipy.imaging.label.comparison), [1] compute_surface_dsc() (in module platipy.imaging.label.comparison), [1] compute_surface_metrics() (in module platipy.imaging.label.comparison), [1] compute_volume() (in module platipy.imaging.label.comparison), [1] compute_volume_metrics() (in module platipy.imaging.label.comparison), [1] compute_weight_map() (in module platipy.imaging.label.fusion) configure_logging() (in module platipy.backend) ContractAugment (class in platipy.imaging.generation.augment) control_point_spacing_distance_to_number() (in module platipy.imaging.registration.utils), [1] convert_mask_to_distance_map() (in module platipy.imaging.registration.utils), [1] convert_mask_to_reg_structure() (in module platipy.imaging.registration.utils), [1] convert_nifti() (in module platipy.dicom.io.nifti_to_rtstruct), [1] convert_nifti_to_dicom_series() (in module platipy.dicom.io.nifti_to_series) convert_rtdose() (in module platipy.dicom.io.rtdose_to_nifti) convert_rtstruct() (in module platipy.dicom.io.rtstruct_to_nifti), [1] convert_simpleitk_to_vtk() (in module platipy.imaging.utils.vessel) correct_volume_overlap() (in module platipy.imaging.label.utils), [1] create_db() (in module platipy.backend.manage) crop_to_label_extent() (in module platipy.imaging.utils.crop), [1] crop_to_roi() (in module platipy.imaging.utils.crop), [1] CustomConfig (class in platipy.backend.api)

D

dashboard() (in module platipy.backend.views) DataObject (class in platipy.backend.models) DataObjectDownloadEndpoint (class in platipy.backend.api) DataObjectEndpoint (class in platipy.backend.api) DataObjectsEndpoint (class in platipy.backend.api) Dataset (class in platipy.backend.models) dataset (platipy.backend.models.DataObject attribute) dataset_id (platipy.backend.models.DataObject attribute) DatasetEndpoint (class in platipy.backend.api) DatasetReadyEndpoint (class in platipy.backend.api) DatasetsEndpoint (class in platipy.backend.api) default() (platipy.backend.models.AlchemyEncoder method) default_timeout() (in module platipy.backend.models) deformable_registration_command_iteration() (in module platipy.imaging.registration.utils), [1] DeformableAugment (class in platipy.imaging.generation.augment) delete() (platipy.backend.api.DataObjectEndpoint method) detect_holes() (in module platipy.imaging.utils.lung) dicom_crawler command line option --dose_format --file_suffix --image_format --input_dir --output_dir --overwrite --short_description --sort_by --structure_format --verbose -b -i -o -s -v

dicom_data() (in module platipy.dicom.tests.test_convert) dicom_listener_aetitle (platipy.backend.application.FlaskApp attribute) dicom_listener_port (platipy.backend.application.FlaskApp attribute) DicomConnector (class in platipy.dicom.communication.connector) DicomLocation (class in platipy.backend.models) DicomLocationEndpoint (class in platipy.backend.api) display_open_cardiac_zip_url_locations() (in module platipy.imaging.projects.cardiac.run) do_find() (platipy.dicom.communication.connector.DicomConnector method) download_series() (platipy.dicom.communication.connector.DicomConnector method) draw_bounding_box_on_axes() (platipy.imaging.visualisation.visualiser.ImageVisualiser method)

E

endpoint (platipy.backend.api.AlgorithmEndpoint attribute) (platipy.backend.api.DataObjectDownloadEndpoint attribute) (platipy.backend.api.DataObjectEndpoint attribute) (platipy.backend.api.DataObjectsEndpoint attribute) (platipy.backend.api.DatasetEndpoint attribute) (platipy.backend.api.DatasetReadyEndpoint attribute) (platipy.backend.api.DatasetsEndpoint attribute) (platipy.backend.api.DicomLocationEndpoint attribute) (platipy.backend.api.TaskStatus attribute) (platipy.backend.api.TriggerEndpoint attribute)

environment variable FLASK_DEBUG evaluate_distance_on_surface() (in module platipy.imaging.label.projection) evaluate_distance_to_reference() (in module platipy.imaging.label.projection) ExpandAugment (class in platipy.imaging.generation.augment) extend_mask() (in module platipy.imaging.generation.mask) extract() (in module platipy.imaging.utils.ventricle)

F

fast_mask() (in module platipy.imaging.projects.bronchus.bronchus) fast_symmetric_forces_demons_registration() (in module platipy.imaging.registration.deformable), [1] fetch_data() (in module platipy.dicom.download.tcia) fetch_log() (in module platipy.backend.views) fetch_status() (in module platipy.backend.views) fill_holes() (in module platipy.imaging.utils.lung)

fix_missing_data() (in module platipy.dicom.io.crawl) (in module platipy.dicom.io.rtstruct_to_nifti), [1] FLASK_DEBUG FlaskApp (class in platipy.backend.application) flatten() (in module platipy.dicom.io.crawl) from_dicom_location (platipy.backend.models.Dataset attribute) from_dicom_location_id (platipy.backend.models.Dataset attribute)

G

gaussian_curve() (in module platipy.imaging.label.iar) generate_airway_mask() (in module platipy.imaging.projects.bronchus.bronchus) generate_comparison_colormix() (in module platipy.imaging.visualisation.utils) generate_field_asymmetric_contract() (in module platipy.imaging.generation.dvf) generate_field_asymmetric_extend() (in module platipy.imaging.generation.dvf) generate_field_expand() (in module platipy.imaging.generation.dvf) generate_field_radial_bend() (in module platipy.imaging.generation.dvf) generate_field_shift() (in module platipy.imaging.generation.dvf) generate_left_ventricle_segments() (in module platipy.imaging.utils.ventricle) generate_lung_mask() (in module platipy.imaging.projects.bronchus.bronchus) generate_primes() (in module platipy.imaging.label.utils), [1] generate_random_augmentation() (in module platipy.imaging.generation.augment) generate_valve_from_great_vessel() (in module platipy.imaging.utils.valve) generate_valve_using_cylinder() (in module platipy.imaging.utils.valve) get() (platipy.backend.api.AlgorithmEndpoint method) (platipy.backend.api.DataObjectDownloadEndpoint method) (platipy.backend.api.DataObjectEndpoint method) (platipy.backend.api.DataObjectsEndpoint method) (platipy.backend.api.DatasetEndpoint method) (platipy.backend.api.DatasetReadyEndpoint method) (platipy.backend.api.DatasetsEndpoint method) (platipy.backend.api.DicomLocationEndpoint method) (platipy.backend.api.TaskStatus method)

get_bone_mask() (in module platipy.imaging.generation.mask) get_collections() (in module platipy.dicom.download.tcia) get_com() (in module platipy.imaging.label.utils), [1] get_dicom_info_from_description() (in module platipy.dicom.io.crawl) get_distance() (in module platipy.imaging.projects.bronchus.bronchus) get_external_mask() (in module platipy.imaging.generation.mask) (in module platipy.imaging.utils.lung) get_hn_data() (in module platipy.dicom.download.tcia) get_hn_nifti() (in module platipy.imaging.tests.data) get_lung_data() (in module platipy.dicom.download.tcia) get_lung_dicom() (in module platipy.imaging.tests.data) get_lung_mask() (in module platipy.imaging.utils.lung) get_lung_nifti() (in module platipy.imaging.tests.data) get_modalities_in_collection() (in module platipy.dicom.download.tcia) get_patients_in_collection() (in module platipy.dicom.download.tcia) get_series_for_study() (platipy.dicom.communication.connector.DicomConnector method) get_studies_for_patient() (platipy.dicom.communication.connector.DicomConnector method) get_suv_bw_scale_factor() (in module platipy.dicom.io.crawl)

H

host (platipy.backend.models.DicomLocation attribute)

I

id (platipy.backend.models.DataObject attribute) (platipy.backend.models.Dataset attribute) (platipy.backend.models.DicomLocation attribute) image (platipy.imaging.visualisation.visualiser.ImageVisualiser property) ImageVisualiser (class in platipy.imaging.visualisation.visualiser), [1] input_data_objects (platipy.backend.models.Dataset attribute) INPUT_PATH segmentation command line option insert_cylinder() (in module platipy.imaging.generation.image)

insert_cylinder_image() (in module platipy.imaging.generation.image) insert_sphere() (in module platipy.imaging.generation.image) insert_sphere_image() (in module platipy.imaging.generation.image) install_atlas_from_zipfile() (in module platipy.imaging.projects.cardiac.run) install_hybrid_cardiac_from_zip() (in module platipy.imaging.projects.cardiac.run) install_open_atlas() (in module platipy.imaging.projects.cardiac.run) is_admin (platipy.backend.models.APIKey attribute) is_fetched (platipy.backend.models.DataObject attribute) is_input (platipy.backend.models.DataObject attribute) is_sent (platipy.backend.models.DataObject attribute)

K

key (platipy.backend.models.APIKey attribute)

L

label_to_roi() (in module platipy.imaging.utils.crop), [1] labelmap (platipy.imaging.visualisation.visualiser.ImageVisualiser property)

linear_registration() (in module platipy.imaging.registration.linear), [1] listen() (platipy.dicom.communication.connector.DicomConnector method) logger (in module platipy.imaging.visualisation.visualiser)

M

median_absolute_deviation() (in module platipy.imaging.label.iar) mediatypes() (platipy.backend.api.AlgorithmEndpoint method) (platipy.backend.api.DataObjectDownloadEndpoint method) (platipy.backend.api.DataObjectEndpoint method) (platipy.backend.api.DataObjectsEndpoint method) (platipy.backend.api.DatasetEndpoint method) (platipy.backend.api.DatasetReadyEndpoint method) (platipy.backend.api.DatasetsEndpoint method) (platipy.backend.api.DicomLocationEndpoint method) (platipy.backend.api.TaskStatus method) (platipy.backend.api.TriggerEndpoint method) meta_data (platipy.backend.models.DataObject attribute) method_decorators (platipy.backend.api.Resource attribute) methods (platipy.backend.api.AlgorithmEndpoint attribute) (platipy.backend.api.DataObjectDownloadEndpoint attribute) (platipy.backend.api.DataObjectEndpoint attribute) (platipy.backend.api.DataObjectsEndpoint attribute) (platipy.backend.api.DatasetEndpoint attribute) (platipy.backend.api.DatasetReadyEndpoint attribute) (platipy.backend.api.DatasetsEndpoint attribute) (platipy.backend.api.DicomLocationEndpoint attribute) (platipy.backend.api.TaskStatus attribute) (platipy.backend.api.TriggerEndpoint attribute) module platipy platipy.backend platipy.backend.api platipy.backend.application platipy.backend.manage platipy.backend.models platipy.backend.sample platipy.backend.sample.sample platipy.backend.tasks platipy.backend.views platipy.cli platipy.cli.dicom_crawler platipy.cli.nifti_to_rtstruct platipy.cli.nifti_to_series platipy.cli.rtstruct_to_nifti platipy.cli.run platipy.cli.segmentation platipy.cli.tcia_download platipy.dicom platipy.dicom.communication platipy.dicom.communication.connector platipy.dicom.download platipy.dicom.download.tcia platipy.dicom.io platipy.dicom.io.crawl platipy.dicom.io.nifti_to_rtstruct, [1] platipy.dicom.io.nifti_to_series platipy.dicom.io.rtdose_to_nifti platipy.dicom.io.rtstruct_to_nifti, [1] platipy.dicom.tests platipy.dicom.tests.test_convert platipy.imaging platipy.imaging.dose.dvh platipy.imaging.generation platipy.imaging.generation.augment platipy.imaging.generation.dvf platipy.imaging.generation.image platipy.imaging.generation.mask platipy.imaging.label platipy.imaging.label.comparison, [1] platipy.imaging.label.fusion platipy.imaging.label.iar platipy.imaging.label.projection platipy.imaging.label.utils, [1] platipy.imaging.projects platipy.imaging.projects.bronchus platipy.imaging.projects.bronchus.bronchus platipy.imaging.projects.bronchus.run platipy.imaging.projects.cardiac platipy.imaging.projects.cardiac.run platipy.imaging.projects.cardiac.service platipy.imaging.registration platipy.imaging.registration.deformable, [1] platipy.imaging.registration.linear, [1] platipy.imaging.registration.utils, [1] platipy.imaging.tests platipy.imaging.tests.data platipy.imaging.tests.test_bronchus platipy.imaging.tests.test_cardiac platipy.imaging.tests.test_visualiser platipy.imaging.utils platipy.imaging.utils.crop, [1] platipy.imaging.utils.geometry platipy.imaging.utils.io platipy.imaging.utils.lung platipy.imaging.utils.valve platipy.imaging.utils.ventricle platipy.imaging.utils.vessel platipy.imaging.visualisation platipy.imaging.visualisation.utils platipy.imaging.visualisation.visualiser

move_series() (platipy.dicom.communication.connector.DicomConnector method) multiscale_demons() (in module platipy.imaging.registration.deformable), [1] mutual_information() (in module platipy.imaging.label.fusion)

N

name (platipy.backend.models.APIKey attribute) (platipy.backend.models.DicomLocation attribute) nifti_data() (in module platipy.dicom.tests.test_convert) (in module platipy.imaging.tests.test_visualiser) nifti_to_rtstruct command line option --dcm_file --mask --out_rt_filename -d -m -o

nifti_to_series command line option --dcm --image --output_directory --tag -d -i -o -t

O

on_association_accepted() (platipy.dicom.communication.connector.DicomConnector method) on_association_released() (platipy.dicom.communication.connector.DicomConnector method) on_c_echo() (platipy.dicom.communication.connector.DicomConnector method) on_c_store() (platipy.dicom.communication.connector.DicomConnector method)

on_celery_setup_logging() (in module platipy.backend) output_data_objects (platipy.backend.models.Dataset attribute) owner_key (platipy.backend.models.Dataset attribute) (platipy.backend.models.DicomLocation attribute)

P

parent (platipy.backend.models.DataObject attribute) parent_id (platipy.backend.models.DataObject attribute) parser (platipy.backend.api.DataObjectDownloadEndpoint attribute) (platipy.backend.api.DataObjectEndpoint attribute) (platipy.backend.api.DatasetEndpoint attribute) (platipy.backend.api.DatasetReadyEndpoint attribute) (platipy.backend.api.DicomLocationEndpoint attribute) (platipy.backend.api.TriggerEndpoint attribute) path (platipy.backend.models.DataObject attribute) platipy module platipy.backend module platipy.backend.api module platipy.backend.application module platipy.backend.manage module platipy.backend.models module platipy.backend.sample module platipy.backend.sample.sample module platipy.backend.tasks module platipy.backend.views module platipy.cli module platipy.cli.dicom_crawler module platipy.cli.nifti_to_rtstruct module platipy.cli.nifti_to_series module platipy.cli.rtstruct_to_nifti module platipy.cli.run module platipy.cli.segmentation module platipy.cli.tcia_download module platipy.dicom module platipy.dicom.communication module platipy.dicom.communication.connector module platipy.dicom.download module platipy.dicom.download.tcia module platipy.dicom.io module platipy.dicom.io.crawl module platipy.dicom.io.nifti_to_rtstruct module, [1] platipy.dicom.io.nifti_to_series module platipy.dicom.io.rtdose_to_nifti module platipy.dicom.io.rtstruct_to_nifti module, [1] platipy.dicom.tests module platipy.dicom.tests.test_convert module platipy.imaging module platipy.imaging.dose.dvh module platipy.imaging.generation module platipy.imaging.generation.augment module platipy.imaging.generation.dvf module platipy.imaging.generation.image module

platipy.imaging.generation.mask module platipy.imaging.label module platipy.imaging.label.comparison module, [1] platipy.imaging.label.fusion module platipy.imaging.label.iar module platipy.imaging.label.projection module platipy.imaging.label.utils module, [1] platipy.imaging.projects module platipy.imaging.projects.bronchus module platipy.imaging.projects.bronchus.bronchus module platipy.imaging.projects.bronchus.run module platipy.imaging.projects.cardiac module platipy.imaging.projects.cardiac.run module platipy.imaging.projects.cardiac.service module platipy.imaging.registration module platipy.imaging.registration.deformable module, [1] platipy.imaging.registration.linear module, [1] platipy.imaging.registration.utils module, [1] platipy.imaging.tests module platipy.imaging.tests.data module platipy.imaging.tests.test_bronchus module platipy.imaging.tests.test_cardiac module platipy.imaging.tests.test_visualiser module platipy.imaging.utils module platipy.imaging.utils.crop module, [1] platipy.imaging.utils.geometry module platipy.imaging.utils.io module platipy.imaging.utils.lung module platipy.imaging.utils.valve module platipy.imaging.utils.ventricle module platipy.imaging.utils.vessel module platipy.imaging.visualisation module platipy.imaging.visualisation.utils module platipy.imaging.visualisation.visualiser module platipy_cli() (in module platipy.cli.run) port (platipy.backend.models.DicomLocation attribute) post() (platipy.backend.api.DataObjectEndpoint method) (platipy.backend.api.DatasetEndpoint method) (platipy.backend.api.DicomLocationEndpoint method) (platipy.backend.api.TriggerEndpoint method) prime_decode_image() (in module platipy.imaging.label.utils), [1] prime_encode_structure_list() (in module platipy.imaging.label.utils), [1] primitive_body_segmentation() (in module platipy.backend.sample.sample) process_dicom_directory() (in module platipy.dicom.io.crawl) process_dicom_file_list() (in module platipy.dicom.io.crawl) process_dicom_series() (in module platipy.dicom.io.crawl) process_probability_image() (in module platipy.imaging.label.fusion) project_onto_arbitrary_plane() (in module platipy.imaging.visualisation.utils)

R

read_dicom_image() (in module platipy.dicom.io.rtstruct_to_nifti), [1] read_dicom_struct_file() (in module platipy.dicom.io.rtstruct_to_nifti), [1] register() (platipy.backend.application.FlaskApp method) registration_command_iteration() (in module platipy.imaging.registration.utils), [1] regrid_spherical_data() (in module platipy.imaging.label.projection) reorientate_vector_field() (in module platipy.imaging.visualisation.utils) Resource (class in platipy.backend.api) RESTFUL_JSON (platipy.backend.api.CustomConfig attribute) return_slice() (in module platipy.imaging.visualisation.utils) rotate_image() (in module platipy.imaging.utils.geometry) rtstruct_to_nifti command line option --dcm_img --dcm_rt_file --output_dir --output_img --prefix --spacing -i -od -oi -p -r

run() (platipy.backend.application.FlaskApp method) run_bronchus_segmentation() (in module platipy.imaging.projects.bronchus.run) run_cardiac_segmentation() (in module platipy.imaging.projects.cardiac.run) run_celery() (in module platipy.backend.manage) run_dicom_listener() (platipy.backend.application.FlaskApp method) run_hybrid_segmentation() (in module platipy.imaging.projects.cardiac.run) run_iar() (in module platipy.imaging.label.iar)

S

safe_sort_dicom_image_list() (in module platipy.dicom.io.crawl) segmentation command line option --config --default --output -c -d -o ALGORITHM INPUT_PATH

send_dcm() (platipy.dicom.communication.connector.DicomConnector method) series_instance_uid (platipy.backend.models.DataObject attribute) set_limits_from_label() (platipy.imaging.visualisation.visualiser.ImageVisualiser method), [1] settings_to_json() (platipy.backend.application.Algorithm method) ShiftAugment (class in platipy.imaging.generation.augment) show() (platipy.imaging.visualisation.visualiser.ImageVisualiser method), [1] simpleitk_image_from_vtk_tube() (in module platipy.imaging.utils.vessel) smooth_and_resample() (in module platipy.imaging.registration.utils), [1] stage_iteration() (in module platipy.imaging.registration.utils), [1] status (platipy.backend.models.DataObject attribute) subsample_vector_field() (in module platipy.imaging.visualisation.utils)

T

TaskStatus (class in platipy.backend.api) test_bronchus_segmentation() (in module platipy.imaging.tests.test_bronchus) test_cardiac_service() (in module platipy.imaging.tests.test_cardiac) test_cardiac_structure_guided_service() (in module platipy.imaging.tests.test_cardiac) test_comparison_overlay_visualisation() (in module platipy.imaging.tests.test_visualiser) test_contour_visualisation() (in module platipy.imaging.tests.test_visualiser) test_convert_dicom_to_nifti() (in module platipy.dicom.tests.test_convert) test_convert_nifti_to_dicom() (in module platipy.dicom.tests.test_convert) test_lung_segmentation() (in module platipy.imaging.tests.test_bronchus) test_scalar_overlay_visualisation() (in module platipy.imaging.tests.test_visualiser)

timeout (platipy.backend.models.Dataset attribute) timestamp (platipy.backend.models.DataObject attribute) (platipy.backend.models.Dataset attribute) to_dicom_location (platipy.backend.models.Dataset attribute) to_dicom_location_id (platipy.backend.models.Dataset attribute) transform_point_set_from_dicom_struct() (in module platipy.dicom.io.crawl) (in module platipy.dicom.io.rtstruct_to_nifti), [1] TriggerEndpoint (class in platipy.backend.api) tube_from_com_list() (in module platipy.imaging.utils.vessel) type (platipy.backend.models.DataObject attribute)

V

vector_angle() (in module platipy.imaging.utils.geometry) vector_image_grid() (in module platipy.imaging.visualisation.utils) vectorised_transform_index_to_physical_point() (in module platipy.imaging.label.utils), [1] vectorised_transform_physical_point_to_index() (in module platipy.imaging.label.utils), [1] verify() (platipy.dicom.communication.connector.DicomConnector method) vessel_spline_generation() (in module platipy.imaging.utils.vessel)

view_endpoint() (in module platipy.backend.views) VisualiseBoundingBox (class in platipy.imaging.visualisation.utils) VisualiseComparisonOverlay (class in platipy.imaging.visualisation.utils) VisualiseContour (class in platipy.imaging.visualisation.utils) VisualiseImage (class in platipy.imaging.visualisation.utils) VisualiseScalarOverlay (class in platipy.imaging.visualisation.utils) VisualiseVectorOverlay (class in platipy.imaging.visualisation.utils)

W

write_nrrd_structure_set() (in module platipy.imaging.utils.io)

write_output_data_to_disk() (in module platipy.dicom.io.crawl) write_vtk_tube_to_file() (in module platipy.imaging.utils.vessel)