platipy.imaging.tests package#

Submodules#

platipy.imaging.tests.data.get_hn_nifti(output_directory='./data/nifti/hn')#

Get some Head and Neck data for testing in Nifti format. If the output_directory already exists no data will be fetched.

Parameters:: output_directory (str, optional) – Path to store test Lung data. Defaults to “./data/nifti/hn”.
Returns:: The output directory containing the downloaded data.
Return type:: str

platipy.imaging.tests.data.get_lung_dicom(output_directory='./data/dicom')#

Get some Lung data for testing in DICOM format. If the output_directory already exists no data will be fetched.

Parameters:: output_directory (str, optional) – Path to store test Lung data. Defaults to “./data/dicom”.
Returns:: The output directory containing the downloaded data.
Return type:: str

platipy.imaging.tests.data.get_lung_nifti(output_directory='./data/nifti/lung')#

Get some Lung data for testing in Nifti format. If the output_directory already exists no data will be fetched.

Parameters:: output_directory (str, optional) – Path to store test Lung data. Defaults to “./data/nifti/lung”.
Returns:: The output directory containing the downloaded data.
Return type:: str

platipy.imaging.tests.test_bronchus.assert_bronchus_mask(bronchus_mask)#: Checks that the bronchus mask looks as expected for the tests in this file

platipy.imaging.tests.test_bronchus.assert_lung_mask(lung_mask)#: Checks that the lung mask looks as expected for the tests in this file

platipy.imaging.tests.test_bronchus.bronchus_data()#

Gets the data needed for the bronchus tests

platipy.imaging.tests.test_bronchus.test_bronchus_segmentation(bronchus_data)#: Tests the bronchus segmentation algorithm

platipy.imaging.tests.test_bronchus.test_lung_segmentation(bronchus_data)#: Tests the lung segmentation used as an initial step of bronchus segmentation

platipy.imaging.tests.test_cardiac.cardiac_data()#

Generates the data needed for the cardiac tests

platipy.imaging.tests.test_cardiac.test_cardiac_service(cardiac_data)#: An end-to-end test to check that the cardiac service is running as expected

platipy.imaging.tests.test_cardiac.test_cardiac_structure_guided_service(cardiac_data)#: An end-to-end test to check that the cardiac structure guided service is running as expected

platipy.imaging.tests.test_visualiser.test_comparison_overlay_visualisation(nifti_data)#

platipy.imaging.tests.test_visualiser.test_contour_visualisation(nifti_data)#

platipy.imaging.tests.test_visualiser.test_scalar_overlay_visualisation(nifti_data)#